Detailed information of SNP:
|
SNP ID:
sf0215985823(Gbrowse)
Chromosome: chr02 Position: 15985823 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.97% | 42.03% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215985823 | C->T | INTERGENIC | None |