Detailed information of SNP:
|
SNP ID:
sf0215991570(Gbrowse)
Chromosome: chr02 Position: 15991570 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 55.27% | 44.73% |
| All Indica | 795 | 84.28% | 15.72% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 85.25% | 14.75% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 209 | 82.30% | 17.70% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215991570 | T->C | INTERGENIC | None |