Detailed information of SNP:
|
SNP ID:
sf0215994922(Gbrowse)
Chromosome: chr02 Position: 15994922 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 96.48% | 3.52% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 441 | 89.34% | 10.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 299 | 84.28% | 15.72% |
| Tropical Japonica | 83 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0215994922 | A->C | LOC_Os02g27190(LOC_Os02g27190.1) | Non-Synonymous SNP |