Detailed information of SNP:
|
SNP ID:
sf0216003224(Gbrowse)
Chromosome: chr02 Position: 16003224 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 72.67% | 27.33% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 476 | 27.73% | 72.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 323 | 14.86% | 85.14% |
| Tropical Japonica | 91 | 73.63% | 26.37% |
| Japonica Intermediate | 62 | 27.42% | 72.58% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216003224 | G->A | LOC_Os02g27210(LOC_Os02g27210.1) | INTRON |