Detailed information of SNP:



SNP ID: sf0216026990(Gbrowse)

Chromosome: chr02

Position: 16026990
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1417 55.61% 44.39%
All Indica799 87.73% 12.27%
All Japonica497 0.80% 99.20%
Aus66 86.36% 13.64%
Indica I375 89.07% 10.93%
Indica II213 87.32% 12.68%
Indica Intermediate211 85.78% 14.22%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 0.00% 100.00%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic13 23.08% 76.92%
Intermediate42 54.76% 45.24%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0216026990 A->G INTERGENIC None