Detailed information of SNP:
|
SNP ID:
sf0216026990(Gbrowse)
Chromosome: chr02 Position: 16026990 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.61% | 44.39% |
| All Indica | 799 | 87.73% | 12.27% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216026990 | A->G | INTERGENIC | None |