Detailed information of SNP:
|
SNP ID:
sf0216087969(Gbrowse)
Chromosome: chr02 Position: 16087969 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 80.53% | 19.47% |
| All Indica | 787 | 65.57% | 34.43% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 63.34% | 36.66% |
| Indica II | 210 | 81.90% | 18.10% |
| Indica Intermediate | 206 | 52.91% | 47.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216087969 | A->G | LOC_Os02g27310(LOC_Os02g27310.1) | Non-Synonymous SNP |