Detailed information of SNP:
|
SNP ID:
sf0216107832(Gbrowse)
Chromosome: chr02 Position: 16107832 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 93.54% | 6.46% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 487 | 81.52% | 18.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 73.48% | 26.52% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216107832 | G->A | LOC_Os02g27350(LOC_Os02g27350.1) | INTRON |