Detailed information of SNP:
|
SNP ID:
sf0216115739(Gbrowse)
Chromosome: chr02 Position: 16115739 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 94.06% | 5.94% |
| All Indica | 795 | 92.33% | 7.67% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 211 | 78.67% | 21.33% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216115739 | G->A | INTERGENIC | None |