Detailed information of SNP:
|
SNP ID:
sf0216115930(Gbrowse)
Chromosome: chr02 Position: 16115930 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 53.92% | 46.08% |
| All Indica | 796 | 86.93% | 13.07% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 211 | 66.82% | 33.18% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216115930 | G->A | INTERGENIC | None |