Detailed information of SNP:
|
SNP ID:
sf0216128656(Gbrowse)
Chromosome: chr02 Position: 16128656 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.53% | 43.47% |
| All Indica | 799 | 90.99% | 9.01% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216128656 | C->T | INTERGENIC | None |