Detailed information of SNP:
|
SNP ID:
sf0216157591(Gbrowse)
Chromosome: chr02 Position: 16157591 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 92.58% | 7.42% |
| All Indica | 796 | 91.96% | 8.04% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 208 | 97.60% | 2.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216157591 | T->A | INTERGENIC | None |