Detailed information of SNP:
|
SNP ID:
sf0216213672(Gbrowse)
Chromosome: chr02 Position: 16213672 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 56.99% | 43.01% |
| All Indica | 799 | 90.86% | 9.14% |
| All Japonica | 494 | 1.01% | 98.99% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 92 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 4 | 50.00% | 50.00% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216213672 | A->G | INTERGENIC | None |