Detailed information of SNP:



SNP ID: sf0216213672(Gbrowse)

Chromosome: chr02

Position: 16213672
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1402 56.99% 43.01%
All Indica799 90.86% 9.14%
All Japonica494 1.01% 98.99%
Aus67 68.66% 31.34%
Indica I375 98.93% 1.07%
Indica II213 72.30% 27.70%
Indica Intermediate211 95.26% 4.74%
Temperate Japonica335 1.19% 98.81%
Tropical Japonica92 0.00% 100.00%
Japonica Intermediate67 1.49% 98.51%
Group VI/Aromatic4 50.00% 50.00%
Intermediate38 52.63% 47.37%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0216213672 A->G INTERGENIC None