Detailed information of SNP:
|
SNP ID:
sf0216217394(Gbrowse)
Chromosome: chr02 Position: 16217394 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 56.99% | 43.01% |
| All Indica | 799 | 91.49% | 8.51% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216217394 | T->A | INTERGENIC | None |