Detailed information of SNP:
|
SNP ID:
sf0216240138(Gbrowse)
Chromosome: chr02 Position: 16240138 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 59.49% | 40.51% |
| All Indica | 797 | 93.73% | 6.27% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216240138 | C->T | INTERGENIC | None |