Detailed information of SNP:
|
SNP ID:
sf0216269648(Gbrowse)
Chromosome: chr02 Position: 16269648 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 94.75% | 5.25% |
| All Indica | 758 | 92.74% | 7.26% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 354 | 93.22% | 6.78% |
| Indica II | 200 | 92.00% | 8.00% |
| Indica Intermediate | 204 | 92.65% | 7.35% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216269648 | C->T | INTERGENIC | None |