Detailed information of SNP:
|
SNP ID:
sf0216272430(Gbrowse)
Chromosome: chr02 Position: 16272430 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 85.14% | 14.86% |
| All Indica | 764 | 73.95% | 26.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 351 | 72.08% | 27.92% |
| Indica II | 209 | 84.69% | 15.31% |
| Indica Intermediate | 204 | 66.18% | 33.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216272430 | A->C | INTERGENIC | None |