Detailed information of SNP:
|
SNP ID:
sf0216314673(Gbrowse)
Chromosome: chr02 Position: 16314673 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 83.29% | 16.71% |
| All Indica | 798 | 76.07% | 23.93% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 75.20% | 24.80% |
| Indica II | 212 | 61.79% | 38.21% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216314673 | C->A | INTERGENIC | None |