Detailed information of SNP:
|
SNP ID:
sf0216329614(Gbrowse)
Chromosome: chr02 Position: 16329614 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1333 | 60.24% | 39.76% |
| All Indica | 733 | 33.42% | 66.58% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 64 | 59.38% | 40.62% |
| Indica I | 342 | 45.03% | 54.97% |
| Indica II | 194 | 21.65% | 78.35% |
| Indica Intermediate | 197 | 24.87% | 75.13% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 6 | 66.67% | 33.33% |
| Intermediate | 35 | 65.71% | 34.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216329614 | G->A | LOC_Os02g27580(LOC_Os02g27580.1) | INTRON |