Detailed information of SNP:
|
SNP ID:
sf0216338471(Gbrowse)
Chromosome: chr02 Position: 16338471 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 54.51% | 45.49% |
| All Indica | 790 | 26.84% | 73.16% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 371 | 27.49% | 72.51% |
| Indica II | 209 | 42.11% | 57.89% |
| Indica Intermediate | 210 | 10.48% | 89.52% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216338471 | C->A | LOC_Os02g27592(LOC_Os02g27592.2) | UTR_3_PRIME |
| sf0216338471 | C->A | LOC_Os02g27592(LOC_Os02g27592.1) | UTR_3_PRIME |