Detailed information of SNP:
|
SNP ID:
sf0216341821(Gbrowse)
Chromosome: chr02 Position: 16341821 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 81.44% | 18.56% |
| All Indica | 797 | 70.89% | 29.11% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 64.44% | 35.56% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216341821 | G->T | LOC_Os02g27594(LOC_Os02g27594.1) | UTR_3_PRIME |