Detailed information of SNP:
|
SNP ID:
sf0216344729(Gbrowse)
Chromosome: chr02 Position: 16344729 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 79.80% | 20.20% |
| All Indica | 796 | 68.47% | 31.53% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 373 | 66.49% | 33.51% |
| Indica II | 212 | 57.55% | 42.45% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216344729 | A->G | INTERGENIC | None |