Detailed information of SNP:
|
SNP ID:
sf0216344746(Gbrowse)
Chromosome: chr02 Position: 16344746 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 77.16% | 22.84% |
| All Indica | 792 | 66.54% | 33.46% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 61.54% | 38.46% |
| Indica I | 371 | 65.23% | 34.77% |
| Indica II | 212 | 54.72% | 45.28% |
| Indica Intermediate | 209 | 80.86% | 19.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216344746 | T->C | INTERGENIC | None |