Detailed information of SNP:
|
SNP ID:
sf0216345133(Gbrowse)
Chromosome: chr02 Position: 16345133 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 72.77% | 27.23% |
| All Indica | 792 | 58.71% | 41.29% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 61.54% | 38.46% |
| Indica I | 370 | 55.68% | 44.32% |
| Indica II | 213 | 50.23% | 49.77% |
| Indica Intermediate | 209 | 72.73% | 27.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216345133 | T->G | INTERGENIC | None |