Detailed information of SNP:
|
SNP ID:
sf0216345951(Gbrowse)
Chromosome: chr02 Position: 16345951 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 58.30% | 41.70% |
| All Indica | 795 | 91.45% | 8.55% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 373 | 93.03% | 6.97% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 4 | 50.00% | 50.00% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216345951 | T->C | INTERGENIC | None |