Detailed information of SNP:
|
SNP ID:
sf0216346083(Gbrowse)
Chromosome: chr02 Position: 16346083 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 62.04% | 37.96% |
| All Indica | 794 | 96.35% | 3.65% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216346083 | A->C | INTERGENIC | None |