Detailed information of SNP:
|
SNP ID:
sf0216346423(Gbrowse)
Chromosome: chr02 Position: 16346423 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 62.01% | 37.99% |
| All Indica | 794 | 96.35% | 3.65% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216346423 | A->G | INTERGENIC | None |