Detailed information of SNP:
|
SNP ID:
sf0216346426(Gbrowse)
Chromosome: chr02 Position: 16346426 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 60.87% | 39.13% |
| All Indica | 782 | 97.06% | 2.94% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 366 | 97.54% | 2.46% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 205 | 98.05% | 1.95% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216346426 | C->T | INTERGENIC | None |