Detailed information of SNP:
|
SNP ID:
sf0216347396(Gbrowse)
Chromosome: chr02 Position: 16347396 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 64.43% | 35.57% |
| All Indica | 769 | 44.34% | 55.66% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 64 | 54.69% | 45.31% |
| Indica I | 364 | 40.11% | 59.89% |
| Indica II | 207 | 45.41% | 54.59% |
| Indica Intermediate | 198 | 51.01% | 48.99% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216347396 | G->C | INTERGENIC | None |