Detailed information of SNP:
|
SNP ID:
sf0216364242(Gbrowse)
Chromosome: chr02 Position: 16364242 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 50.99% | 49.01% |
| All Indica | 798 | 21.55% | 78.45% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 374 | 23.80% | 76.20% |
| Indica II | 213 | 33.33% | 66.67% |
| Indica Intermediate | 211 | 5.69% | 94.31% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216364242 | T->C | INTERGENIC | None |