Detailed information of SNP:
|
SNP ID:
sf0216366854(Gbrowse)
Chromosome: chr02 Position: 16366854 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 53.37% | 46.63% |
| All Indica | 791 | 25.28% | 74.72% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 368 | 29.35% | 70.65% |
| Indica II | 213 | 32.86% | 67.14% |
| Indica Intermediate | 210 | 10.48% | 89.52% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216366854 | G->A | INTERGENIC | None |