Detailed information of SNP:
|
SNP ID:
sf0216366976(Gbrowse)
Chromosome: chr02 Position: 16366976 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.33% | 47.67% |
| All Indica | 798 | 23.43% | 76.57% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 374 | 26.47% | 73.53% |
| Indica II | 213 | 33.80% | 66.20% |
| Indica Intermediate | 211 | 7.58% | 92.42% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216366976 | C->T | INTERGENIC | None |