Detailed information of SNP:
|
SNP ID:
sf0216374045(Gbrowse)
Chromosome: chr02 Position: 16374045 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 93.06% | 6.94% |
| All Indica | 781 | 89.24% | 10.76% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 360 | 90.28% | 9.72% |
| Indica II | 210 | 80.00% | 20.00% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216374045 | A->G | LOC_Os02g27640(LOC_Os02g27640.1) | Non-Synonymous SNP |