Detailed information of SNP:
|
SNP ID:
sf0216374150(Gbrowse)
Chromosome: chr02 Position: 16374150 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1378 | 96.44% | 3.56% |
| All Indica | 761 | 93.96% | 6.04% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 359 | 95.82% | 4.18% |
| Indica II | 198 | 93.43% | 6.57% |
| Indica Intermediate | 204 | 91.18% | 8.82% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216374150 | A->C | LOC_Os02g27640(LOC_Os02g27640.1) | Non-Synonymous SNP |