Detailed information of SNP:
|
SNP ID:
sf0216375136(Gbrowse)
Chromosome: chr02 Position: 16375136 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.39% | 13.61% |
| All Indica | 798 | 81.58% | 18.42% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 78.34% | 21.66% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216375136 | G->A | LOC_Os02g27650(LOC_Os02g27650.1) | Non-Synonymous SNP |