Detailed information of SNP:
SNP ID:
sf0216375606(Gbrowse)
Chromosome: chr02 Position: 16375606 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1411 | 87.38% | 12.62% |
All Indica | 792 | 81.06% | 18.94% |
All Japonica | 497 | 99.80% | 0.20% |
Aus | 66 | 74.24% | 25.76% |
Indica I | 370 | 77.30% | 22.70% |
Indica II | 211 | 72.99% | 27.01% |
Indica Intermediate | 211 | 95.73% | 4.27% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0216375606 | G->A | LOC_Os02g27650(LOC_Os02g27650.1) | Synonymous |