Detailed information of SNP:
|
SNP ID:
sf0216377120(Gbrowse)
Chromosome: chr02 Position: 16377120 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 87.11% | 12.89% |
| All Indica | 795 | 80.88% | 19.12% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 76.74% | 23.26% |
| Indica II | 210 | 73.81% | 26.19% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216377120 | C->T | LOC_Os02g27650(LOC_Os02g27650.1) | Non-Synonymous SNP |