Detailed information of SNP:
|
SNP ID:
sf0216377540(Gbrowse)
Chromosome: chr02 Position: 16377540 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 87.16% | 12.84% |
| All Indica | 797 | 80.68% | 19.32% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 76.20% | 23.80% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216377540 | G->A | INTERGENIC | None |