Detailed information of SNP:
|
SNP ID:
sf0216389011(Gbrowse)
Chromosome: chr02 Position: 16389011 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.47% | 38.53% |
| All Indica | 798 | 35.84% | 64.16% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 375 | 26.67% | 73.33% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 210 | 19.05% | 80.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216389011 | C->A | INTERGENIC | None |