Detailed information of SNP:
|
SNP ID:
sf0216393663(Gbrowse)
Chromosome: chr02 Position: 16393663 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 54.44% | 45.56% |
| All Indica | 770 | 77.92% | 22.08% |
| All Japonica | 496 | 13.91% | 86.09% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 365 | 77.53% | 22.47% |
| Indica II | 196 | 64.80% | 35.20% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216393663 | A->T | INTERGENIC | None |