Detailed information of SNP:
|
SNP ID:
sf0216403950(Gbrowse)
Chromosome: chr02 Position: 16403950 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 60.71% | 39.29% |
| All Indica | 792 | 35.48% | 64.52% |
| All Japonica | 495 | 97.98% | 2.02% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 26.47% | 73.53% |
| Indica II | 208 | 69.23% | 30.77% |
| Indica Intermediate | 210 | 18.10% | 81.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216403950 | C->T | INTERGENIC | None |