Detailed information of SNP:
|
SNP ID:
sf0216411173(Gbrowse)
Chromosome: chr02 Position: 16411173 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 52.68% | 47.32% |
| All Indica | 798 | 74.94% | 25.06% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 75.40% | 24.60% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216411173 | A->G | INTERGENIC | None |