Detailed information of SNP:
|
SNP ID:
sf0216419083(Gbrowse)
Chromosome: chr02 Position: 16419083 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 58.88% | 41.12% |
| All Indica | 787 | 34.69% | 65.31% |
| All Japonica | 491 | 94.91% | 5.09% |
| Aus | 63 | 66.67% | 33.33% |
| Indica I | 374 | 26.74% | 73.26% |
| Indica II | 205 | 66.83% | 33.17% |
| Indica Intermediate | 208 | 17.31% | 82.69% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 89 | 83.15% | 16.85% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216419083 | G->A | LOC_Os02g27730(LOC_Os02g27730.1) | Synonymous |