Detailed information of SNP:
|
SNP ID:
sf0216441807(Gbrowse)
Chromosome: chr02 Position: 16441807 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 57.31% | 42.69% |
| All Indica | 796 | 34.30% | 65.70% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 27.54% | 72.46% |
| Indica II | 212 | 61.79% | 38.21% |
| Indica Intermediate | 210 | 18.57% | 81.43% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216441807 | A->G | INTERGENIC | None |