Detailed information of SNP:
|
SNP ID:
sf0216442562(Gbrowse)
Chromosome: chr02 Position: 16442562 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1253 | 84.04% | 15.96% |
| All Indica | 651 | 70.81% | 29.19% |
| All Japonica | 487 | 98.77% | 1.23% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 293 | 68.26% | 31.74% |
| Indica II | 192 | 83.85% | 16.15% |
| Indica Intermediate | 166 | 60.24% | 39.76% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 94.25% | 5.75% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216442562 | T->C | INTERGENIC | None |