Detailed information of SNP:
|
SNP ID:
sf0216456088(Gbrowse)
Chromosome: chr02 Position: 16456088 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 53.39% | 46.61% |
| All Indica | 798 | 75.81% | 24.19% |
| All Japonica | 497 | 16.90% | 83.10% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 75.67% | 24.33% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216456088 | T->G | INTERGENIC | None |