Detailed information of SNP:
|
SNP ID:
sf0216456843(Gbrowse)
Chromosome: chr02 Position: 16456843 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.77% | 43.23% |
| All Indica | 798 | 79.07% | 20.93% |
| All Japonica | 497 | 17.71% | 82.29% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 76.00% | 24.00% |
| Indica II | 212 | 69.34% | 30.66% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216456843 | A->G | INTERGENIC | None |