Detailed information of SNP:
|
SNP ID:
sf0216468196(Gbrowse)
Chromosome: chr02 Position: 16468196 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 56.61% | 43.39% |
| All Indica | 797 | 79.17% | 20.83% |
| All Japonica | 495 | 17.17% | 82.83% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 76.27% | 23.73% |
| Indica II | 211 | 69.19% | 30.81% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 333 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216468196 | T->C | LOC_Os02g27820(LOC_Os02g27820.1) | INTRON |