Detailed information of SNP:
|
SNP ID:
sf0216470959(Gbrowse)
Chromosome: chr02 Position: 16470959 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.07% | 43.93% |
| All Indica | 797 | 78.67% | 21.33% |
| All Japonica | 496 | 16.73% | 83.27% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 75.47% | 24.53% |
| Indica II | 211 | 69.19% | 30.81% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216470959 | G->A | INTERGENIC | None |