Detailed information of SNP:
|
SNP ID:
sf0216473726(Gbrowse)
Chromosome: chr02 Position: 16473726 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 92.12% | 7.88% |
| All Indica | 790 | 86.71% | 13.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 77.42% | 22.58% |
| Indica II | 207 | 94.20% | 5.80% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216473726 | G->A | LOC_Os02g27830(LOC_Os02g27830.1) | INTRON |