Detailed information of SNP:
|
SNP ID:
sf0216476948(Gbrowse)
Chromosome: chr02 Position: 16476948 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1295 | 84.17% | 15.83% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 375 | 48.80% | 51.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 242 | 24.38% | 75.62% |
| Tropical Japonica | 87 | 98.85% | 1.15% |
| Japonica Intermediate | 46 | 82.61% | 17.39% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216476948 | G->A | LOC_Os02g27830(LOC_Os02g27830.1) | INTRON |